{
"@context": "/terms/",
"@id": "/multiplexed-samples/TSTSM44305799/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "TSTSM44305799",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf12_10x3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM58065068](/in-vitro-systems/TSTSM58065068/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM06742506](/in-vitro-systems/TSTSM06742506/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM04323646](/in-vitro-systems/TSTSM04323646/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM12410272](/in-vitro-systems/TSTSM12410272/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM46510587](/in-vitro-systems/TSTSM46510587/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM56394952](/in-vitro-systems/TSTSM56394952/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM40057957](/in-vitro-systems/TSTSM40057957/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM38944666](/in-vitro-systems/TSTSM38944666/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM99800281](/in-vitro-systems/TSTSM99800281/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject tissue [TSTSM83932314](/tissues/TSTSM83932314/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM86332446](/in-vitro-systems/TSTSM86332446/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM87259449](/in-vitro-systems/TSTSM87259449/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM45158877](/in-vitro-systems/TSTSM45158877/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM09866017](/in-vitro-systems/TSTSM09866017/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject tissue [TSTSM36563972](/tissues/TSTSM36563972/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
},
{
"category": "mismatched status",
"detail": "Archived multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has in progress subobject in vitro system [TSTSM34090435](/in-vitro-systems/TSTSM34090435/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/TSTSM44305799/"
}
],
"WARNING": [
{
"category": "missing barcode map",
"detail": "Multiplexed sample [TSTSM44305799](/multiplexed-samples/TSTSM44305799/) has no `barcode_map`. Multiplexed samples that use barcodes for demultiplexing are expected to specify a barcode map.",
"level": 40,
"level_name": "WARNING",
"name": "audit_multiplexed_sample_no_barcode_map",
"path": "/multiplexed-samples/TSTSM44305799/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"creation_timestamp": "2024-05-07T22:59:35.780284+00:00",
"disease_terms": [],
"donors": [
"/human-donors/TSTDO20661845/",
"/human-donors/TSTDO56849153/",
"/human-donors/TSTDO69840010/"
],
"file_sets": [
{
"@id": "/auxiliary-sets/TSTDS98379428/",
"accession": "TSTDS98379428",
"aliases": [
"ansuman-satpathy:multiseq_igvf12_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "in progress",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/TSTDS03295937/",
"accession": "TSTDS03295937",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf12_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/TSTDS84995441/",
"accession": "TSTDS84995441",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf12_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "in progress",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/TSTSM45158877/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM45158877",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM56394952/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM56394952",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 1 day, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM58065068/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM58065068",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 2 days, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM04323646/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM04323646",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 3 days, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM40057957/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM40057957",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 4 days, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM09866017/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM09866017",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 5 days, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM86332446/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM86332446",
"donors": [
{
"@id": "/human-donors/TSTDO69840010/",
"accession": "TSTDO69840010"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 6 days, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM46510587/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM46510587",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM38944666/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM38944666",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 1 day, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM06742506/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM06742506",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 2 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM87259449/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM87259449",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 3 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM99800281/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM99800281",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 4 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM34090435/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM34090435",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 5 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/TSTSM12410272/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM12410272",
"donors": [
{
"@id": "/human-donors/TSTDO56849153/",
"accession": "TSTDO56849153"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
}
],
"status": "in progress",
"summary": "B differentiated cell specimen induced to plasmablast for 6 days, male, Homo sapiens"
},
{
"@id": "/tissues/TSTSM83932314/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM83932314",
"donors": [
{
"@id": "/human-donors/TSTDO20661845/",
"accession": "TSTDO20661845"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"term_name": "bone marrow"
}
],
"status": "in progress",
"summary": "bone marrow tissue, male, Homo sapiens"
},
{
"@id": "/tissues/TSTSM36563972/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "TSTSM36563972",
"donors": [
{
"@id": "/human-donors/TSTDO20661845/",
"accession": "TSTDO20661845"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"term_name": "bone marrow"
}
],
"status": "in progress",
"summary": "bone marrow tissue, male, Homo sapiens"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"release_timestamp": "2024-05-20T23:55:42.079459+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"term_name": "B cell"
},
{
"@id": "/sample-terms/UBERON_0002371/",
"term_name": "bone marrow"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/bradley-bernstein/",
"title": "Bradley Bernstein, Broad"
},
{
"@id": "/labs/harinder-singh/",
"title": "Harinder Singh, University of Pittsburgh"
}
],
"status": "archived",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: B differentiated cell specimen induced to plasmablast for 3 days, female, Homo sapiens; B differentiated cell specimen induced to plasmablast for 2 days, male, Homo sapiens; ... and 14 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "fcb6c1d8-ba7d-4e44-9a98-3878b2fb0219",
"virtual": false
}